Basic Information
Locus ID:
Thhalv10028406m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 6610680 | 6615580 | + | Thhalv10028406m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 102,292.82 Da | 49.03 | 77.35 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 739 | 891 | 1.10541E-59 | - |
| Pfam | PF06337 | DUSP domain | 41 | 133 | 1.4E-25 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 302 | 890 | 4.8E-85 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 133 | 9.02E-31 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 299 | 893 | 5.56E-113 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 11 | 145 | 3.9E-38 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 288 | 502 | 4.9E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 635 | 901 | 3.2E-60 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 146 | 232 | 1.2E-6 | - |
| SMART | SM00695 | dusp | 36 | 135 | 2.4E-43 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 17 | 132 | 20.12738 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 301 | 893 | 58.614456 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 835 | 852 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 302 | 317 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 658 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_006397041.1 | ubiquitin carboxyl-terminal hydrolase 10 [Eutrema salsugineum] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | V4L4D7 | Ubiquitin carboxyl-terminal hydrolase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028406mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology