Basic Information
Locus ID:
Thhalv10028383m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
spa1-related 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 4982208 | 4988109 | - | Thhalv10028383m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 114,492.11 Da | 52.18 | 76.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 711 | 1029 | 1.90573E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 893 | 925 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 803 | 841 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 716 | 1031 | 3.05E-53 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 543 | 7.92E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 295 | 553 | 1.8E-21 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 692 | 1033 | 1.1E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 709 | 748 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 887 | 925 | 5.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 801 | 841 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 844 | 883 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 991 | 1031 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 936 | 975 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 759 | 798 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 894 | 927 | 11.075592 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 808 | 843 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 894 | 927 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 808 | 850 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 783 | 807 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 186 | 547 | 9.093122 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 785 | 799 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 828 | 842 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 912 | 926 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 785 | 799 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 828 | 842 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 912 | 926 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_006396956.1 | protein SPA1-RELATED 2 [Eutrema salsugineum] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | V4L401 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028383mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology