Basic Information
Locus ID:
Thhalv10028374m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
DDB1A
Description:
damaged dna binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3 | 1901973 | 1908566 | - | Thhalv10028374m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 121,239.70 Da | 32.64 | 99.60 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term | 76 | 537 | 5.5E-112 | IPR018846 |
| Pfam | PF03178 | CPSF A subunit region | 745 | 1057 | 7.5E-78 | IPR004871 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 466 | 886 | 7.32E-10 | IPR036322 |
| Gene3D | G3DSA:1.10.150.910 | - | 1002 | 1088 | 9.4E-31 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 347 | 0.0 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 386 | 703 | 0.0 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 997 | 0.0 | IPR015943 |
| Coils | Coil | Coil | 422 | 442 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05420.1 | damaged DNA binding protein 1A. Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. | 0 |
| RefSeq | XP_006396601.1 | DNA damage-binding protein 1a [Eutrema salsugineum] | 0 |
| Q9M0V3 | DNA damage-binding protein 1a OS=Arabidopsis thaliana OX=3702 GN=DDB1A PE=1 SV=1 | 0 | |
| TrEMBL | E4MYB1 | mRNA, clone: RTFL01-47-K01 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38772 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_640 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016141 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g187500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25694, Sbi_jg9530 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19100 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027443 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44090, Sgl48857 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009240, gene:ENSEOMG00000010763 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0011040, CQ.Regalona.r1.8BG0012280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075990 |
| Apiaceae | Apium graveolens | 1 | Ag8G00741 |
| Arecaceae | Cocos nucifera | 3 | COCNU_12G000350, scaffold000669G000040 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC120108331, gene-LOC120109131, gene-LOC120109791 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1594.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G13765, Ftri18G24988 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G05420.1, AT4G21100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024273m.g.v1.0, Thhalv10028374m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03670.v2.2, Sp7g19180.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g022260.2N, BniB08g038640.2N, BniB08g046620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0537 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0633, Cgl04G0635 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0512s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.165 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027850, Pov_00038547 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24936 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1203, CH01.2695, CH05.1505 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0361010, gene-QOZ80_5BG0409460 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0094520.1, HORVU.MOREX.r3.3HG0268390.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_014993, gene-QYE76_014995, gene-QYE76_015567 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G013420, Oco02G013570, Oco09G018360, Oco10G018290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g40320.1, LOC_Os05g51480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G257900 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0206315, Pt_Chr0505878, Pt_Chr0505880, Pt_Chr0505882 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G016330, Chr0G020280, Chr0G030030, Chr12G020430 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G739100, Tel1E01G739300, Tel1E01G739500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG064150, gene_TRIDC1BG073390 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G473400.1, TraesCS1D02G445700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb297320_P004, Zm00001eb345240_P002 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13528, nbis-gene-13529, nbis-gene-13531 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28923 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1142, evm.TU.LG05.1683 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.947 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16722, nbisL1-mrna-16797 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5827 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17253 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.118 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012206 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9169 |
| Salicaceae | Populus euphratica | 1 | populus_peu00933 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631575 |
| Solanaceae | Solanum chilense | 1 | SOLCI000078300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011170 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9698 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2861, TC06G1119 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22680.v3.1 |