Basic Information
Locus ID:
Thhalv10028349m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3615087 | 3617908 | - | Thhalv10028349m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 50,427.65 Da | 56.43 | 74.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 135 | 178 | 4.26455E-19 | - |
| Pfam | PF13639 | Ring finger domain | 135 | 178 | 6.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 184 | 1.46E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 183 | 3.9E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 177 | 5.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 178 | 12.828597 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 306 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024014785.1 | RING-H2 finger protein ATL46 [Eutrema salsugineum] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | V4L981 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028349mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology