Basic Information
Locus ID:
Thhalv10028306m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 264867 | 265603 | + | Thhalv10028306m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 13,892.75 Da | 30.14 | 79.10 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 5 | 115 | 1.09718E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 89 | 4.0E-27 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 119 | 2.1E-32 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 91 | 4.0E-30 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 120 | 1.1E-19 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 122 | 28.659821 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.1 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_024004069.1 | ubiquitin-conjugating enzyme E2-17 kDa [Eutrema salsugineum] | 0 |
| P15732 | Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC5 PE=1 SV=1 | 0 | |
| TrEMBL | V4LW25 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028306mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 40 | Thhalv10000486m.g.v1.0, Thhalv10000596m.g.v1.0 ... |