halophFGD

Basic Information

Locus ID: Thhalv10028258m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_14	2845744	2846277	+	Thhalv10028258m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.73	20,698.68 Da	56.64	91.98	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	5	48	7.0E-12	IPR001810
SUPERFAMILY	SSF81383	F-box domain	6	65	8.24E-14	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	2	47	3.5E-10	-
SMART	SM00256	fbox_2	8	48	8.2E-11	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	2	49	13.23318	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09650.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_006415282.1	F-box/LRR-repeat/kelch-repeat protein At1g09650 [Eutrema salsugineum]
Swiss-Prot	O04488	F-box/LRR-repeat/kelch-repeat protein At1g09650 OS=Arabidopsis thaliana OX=3702 GN=At1g09650 PE=2 SV=1
TrEMBL	V4LWD7	F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028258mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	15	AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... AT1G12870.1, AT1G13200.1, AT1G14315.2, AT1G15015.1, AT2G02030.1, AT2G05600.1, AT2G34280.1, AT3G25550.1, AT4G01640.1, AT5G10340.1, AT5G16285.1
Brassicaceae	Eutrema salsugineum	30	Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... Thhalv10003053m.g.v1.0, Thhalv10005403m.g.v1.0, Thhalv10005596m.g.v1.0, Thhalv10005640m.g.v1.0, Thhalv10005659m.g.v1.0, Thhalv10005704m.g.v1.0, Thhalv10006448m.g.v1.0, Thhalv10006469m.g.v1.0, Thhalv10007816m.g.v1.0, Thhalv10007821m.g.v1.0, Thhalv10009459m.g.v1.0, Thhalv10009591m.g.v1.0, Thhalv10009680m.g.v1.0, Thhalv10009780m.g.v1.0, Thhalv10009873m.g.v1.0, Thhalv10010027m.g.v1.0, Thhalv10011073m.g.v1.0, Thhalv10012265m.g.v1.0, Thhalv10016004m.g.v1.0, Thhalv10017550m.g.v1.0, Thhalv10017844m.g.v1.0, Thhalv10021927m.g.v1.0, Thhalv10021998m.g.v1.0, Thhalv10022335m.g.v1.0, Thhalv10023120m.g.v1.0, Thhalv10026946m.g.v1.0, Thhalv10028258m.g.v1.0, Thhalv10028312m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... SpUn0138_0020.v2.2
Brassicaceae	Brassica nigra	27	BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... BniB02g007700.2N, BniB02g007710.2N, BniB02g007720.2N, BniB02g007750.2N, BniB02g042290.2N, BniB02g042300.2N, BniB02g044690.2N, BniB02g052300.2N, BniB03g005530.2N, BniB03g006010.2N, BniB03g015920.2N, BniB03g022450.2N, BniB04g008600.2N, BniB04g009830.2N, BniB04g009870.2N, BniB04g014510.2N, BniB04g027260.2N, BniB04g039550.2N, BniB04g054100.2N, BniB04g054110.2N, BniB05g015500.2N, BniB05g065960.2N, BniB07g019140.2N, BniB08g072430.2N
Plantaginaceae	Plantago ovata	1	Pov_00035511