Basic Information
Locus ID:
Thhalv10028252m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3947934 | 3948326 | + | Thhalv10028252m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 14,167.26 Da | 32.82 | 104.15 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 57 | 124 | 3.1E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 48 | 128 | 6.68E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 53 | 130 | 1.6E-19 | - |
| SMART | SM00213 | ubq_7 | 55 | 126 | 7.8E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 55 | 130 | 17.103785 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 65 | 85 | 5.2E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 86 | 106 | 5.2E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 107 | 128 | 5.2E-9 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53945.1 | - | 0 |
| RefSeq | XP_006405575.1 | polyubiquitin [Eutrema salsugineum] | 0 |
| Q54L35 | Ubiquitin-like protein NEDD8-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=nedd8l2 PE=3 SV=1 | 0 | |
| TrEMBL | V4M466 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028252mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53980.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10012342m.g.v1.0, Thhalv10028077m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g059930.2N, BniB06g059940.2N |