halophFGD

Basic Information

Locus ID: Thhalv10028181m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_14	4671693	4672981	+	Thhalv10028181m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.05	47,357.20 Da	56.41	89.85	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	236	355	5.3E-26	IPR013187
SUPERFAMILY	SSF81383	F-box domain	34	92	5.1E-7	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	130	371	1.9E-43	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G62660.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_006394363.2	putative F-box protein At5g62660 [Eutrema salsugineum]
Swiss-Prot	Q9LV12	Putative F-box protein At5g62660 OS=Arabidopsis thaliana OX=3702 GN=At5g62660 PE=4 SV=1
TrEMBL	V4LTJ3	FBA_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028181mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	11	AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... AT3G52320.1, AT3G52330.1, AT3G52510.1, AT4G19930.1, AT4G19940.1, AT5G62510.1, AT5G62660.1
Brassicaceae	Eutrema salsugineum	16	Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... Thhalv10005397m.g.v1.0, Thhalv10005666m.g.v1.0, Thhalv10008003m.g.v1.0, Thhalv10009896m.g.v1.0, Thhalv10011525m.g.v1.0, Thhalv10012025m.g.v1.0, Thhalv10016561m.g.v1.0, Thhalv10019615m.g.v1.0, Thhalv10019649m.g.v1.0, Thhalv10023110m.g.v1.0, Thhalv10025237m.g.v1.0, Thhalv10028181m.g.v1.0, Thhalv10029357m.g.v1.0, Thhalv10029429m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2
Brassicaceae	Brassica nigra	35	BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... BniB02g071200.2N, BniB02g071210.2N, BniB02g088710.2N, BniB03g004100.2N, BniB03g004340.2N, BniB03g022920.2N, BniB03g022950.2N, BniB03g051110.2N, BniB03g051150.2N, BniB04g005130.2N, BniB04g046980.2N, BniB04p000224.2N, BniB05g010060.2N, BniB07g000640.2N, BniB07g043030.2N, BniB07g054790.2N, BniB07g061700.2N, BniB08g002270.2N, BniB08g026550.2N, BniB08g026610.2N, BniB08g026650.2N, BniB08g026660.2N, BniB08g026700.2N, BniB08g026730.2N, BniB08g066390.2N, BniB08g066550.2N, BniB08g066650.2N, BniB08g066670.2N, BniB08g066690.2N, BniB08g071850.2N, BniB08g072900.2N, BniB08g072960.2N