Basic Information
Locus ID:
Thhalv10028082m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3950996 | 3951382 | + | Thhalv10028082m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 13,851.94 Da | 22.41 | 103.44 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 55 | 122 | 2.74967E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 55 | 124 | 2.8E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 46 | 126 | 6.61E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 49 | 128 | 9.9E-18 | - |
| SMART | SM00213 | ubq_7 | 53 | 124 | 5.8E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 53 | 128 | 17.212662 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 84 | 104 | 7.4E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 105 | 126 | 7.4E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 63 | 83 | 7.4E-7 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53945.1 | - | 0 |
| RefSeq | XP_006405576.1 | polyubiquitin [Eutrema salsugineum] | 0 |
| P23324 | Polyubiquitin OS=Euplotes eurystomus OX=5941 PE=3 SV=2 | 0 | |
| TrEMBL | V4LTB4 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028082mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53980.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10012342m.g.v1.0, Thhalv10028077m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g059930.2N, BniB06g059940.2N |