Basic Information
Locus ID:
Thhalv10028077m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3922856 | 3923236 | + | Thhalv10028077m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 14,481.47 Da | 31.57 | 98.98 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 55 | 125 | 2.2E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 46 | 126 | 8.29E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 50 | 126 | 2.8E-18 | - |
| SMART | SM00213 | ubq_7 | 53 | 127 | 3.8E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 53 | 127 | 13.380193 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53950.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_006405572.2 | polyubiquitin [Eutrema salsugineum] | 0 |
| TrEMBL | V4L9G3 | Ubiquitin-like domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028077mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53980.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10012342m.g.v1.0, Thhalv10028077m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g059930.2N, BniB06g059940.2N |