Basic Information
Locus ID:
Thhalv10028040m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 4967877 | 4969354 | - | Thhalv10028040m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 47,760.81 Da | 42.68 | 66.13 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 114 | 162 | 9.2E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 61 | 104 | 2.8E-9 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 269 | 357 | 2.79E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 35 | 117 | 6.07E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 107 | 166 | 5.06E-5 | - |
| Gene3D | G3DSA:3.30.60.20 | - | 7 | 61 | 3.1E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 138 | 2.3E-7 | IPR013083 |
| SMART | SM00249 | PHD_3 | 25 | 63 | 29.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 76 | 136 | 1.6E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 74 | 138 | 8.760201 | IPR019787 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 11 | 61 | 8.553101 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | NP_187968.1 | Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana] | 0 |
| TrEMBL | V4LTL5 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028040mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |