Basic Information
Locus ID:
Thhalv10027948m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 2664001 | 2665957 | + | Thhalv10027948m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 21,266.45 Da | 43.34 | 62.51 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 6.63155E-52 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 142 | 2.6E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 148 | 2.26E-46 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 160 | 8.8E-50 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 6.4E-52 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 43.207188 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 187 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_006405362.1 | ubiquitin-conjugating enzyme E2 4 [Eutrema salsugineum] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1J3E6R2 | Ubiquitin-conjugating enzyme E2 4 OS=Noccaea caerulescens OX=107243 GN=GA_TR17794_c0_g1_i1_g.56694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology