Basic Information
Locus ID:
Thhalv10027946m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains Zinc finger, RING-type (InterPro IPR001841), Zinc finger, C3HC4 RING-type (InterPro IPR018957)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 2613777 | 2614839 | + | Thhalv10027946m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 22,473.01 Da | 68.69 | 79.17 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 180 | 3.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 185 | 1.11E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 186 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 138 | 179 | 3.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 180 | 12.754832 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020875353.1 | RING-H2 finger protein ATL39 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9SK92 | E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1 | 0 | |
| TrEMBL | V4NKB1 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027946mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G51930.1, AT5G41430.1, AT5G41440.1, AT5G41450.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10011950m.g.v1.0, Thhalv10011984m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g028750.2N, BniB07g004040.2N |