Basic Information
Locus ID:
Thhalv10027790m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 5682670 | 5685978 | - | Thhalv10027790m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 41,389.15 Da | 48.34 | 84.65 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 340 | 382 | 1.05153E-23 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 153 | 202 | 1.10706E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 1.42227E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 264 | 319 | 8.4E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 1.2E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 159 | 197 | 1.6E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 344 | 379 | 1.3E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 260 | 325 | 2.75E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 207 | 7.2E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 327 | 386 | 9.0E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 1.21E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 152 | 203 | 2.1E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 253 | 320 | 2.9E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 4.1E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 336 | 383 | 1.2E-22 | - |
| SMART | SM00165 | uba_6 | 159 | 199 | 3.9E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 74 | 8.6E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 344 | 381 | 5.1E-8 | IPR015940 |
| SMART | SM00727 | CBM | 262 | 305 | 9.8E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 387 | 1.3E-113 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 75 | 19.629732 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 341 | 382 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 157 | 200 | 12.498699 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 369 | 6.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 290 | 312 | 6.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 385 | 6.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 338 | 354 | 6.2E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006405766.1 | ubiquitin receptor RAD23d [Eutrema salsugineum] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | V4LTS1 | Ubiquitin receptor RAD23 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027790mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology