Basic Information
Locus ID:
Thhalv10027745m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3000703 | 3002710 | - | Thhalv10027745m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 50,739.61 Da | 25.68 | 70.06 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 369 | 0.0035 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 162 | 4.1E-5 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 330 | 4.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 172 | 207 | 0.0078 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 138 | 162 | 3.01E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 459 | 4.07E-41 | IPR036322 |
| Gene3D | G3DSA:1.20.120.1350 | - | 133 | 172 | 4.0E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 463 | 8.0E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 0.0033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 370 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 330 | 0.0011 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 137 | 163 | 2.2E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 420 | 457 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 284 | 72.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 369 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 142 | 164 | 13.610065 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 339 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 207 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 216 | 12.947979 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 317 | 331 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 357 | 371 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 1.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 1.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 130 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.1 | WD-40 repeat family protein / zfwd3 protein (ZFWD3). | 0 |
| RefSeq | XP_006405417.1 | zinc finger CCCH domain-containing protein 59 [Eutrema salsugineum] | 0 |
| Q9FKR9 | Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=ZFWD3 PE=2 SV=1 | 0 | |
| TrEMBL | V4L8X3 | C3H1-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027745mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology