Basic Information
Locus ID:
Thhalv10027743m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3539127 | 3541344 | + | Thhalv10027743m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 50,521.43 Da | 30.06 | 73.28 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11715 | Nucleoporin Nup120/160 | 191 | 223 | 1.5E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 370 | 9.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 331 | 4.9E-5 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 144 | 163 | 1.6E-4 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 140 | 163 | 8.11E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 460 | 2.29E-42 | IPR036322 |
| Gene3D | G3DSA:1.20.120.1350 | - | 133 | 173 | 4.3E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 257 | 8.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 259 | 464 | 9.2E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 377 | 418 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 208 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 331 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 458 | 2.6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 138 | 164 | 1.8E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 334 | 371 | 9.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 91.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 340 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 176 | 208 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 217 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 370 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 143 | 165 | 13.03733 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 318 | 332 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 358 | 372 | 7.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 7.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 195 | 209 | 7.0E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.1 | WD-40 repeat family protein / zfwd3 protein (ZFWD3). | 0 |
| RefSeq | XP_006405507.1 | zinc finger CCCH domain-containing protein 59 [Eutrema salsugineum] | 0 |
| Q9FKR9 | Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=ZFWD3 PE=2 SV=1 | 0 | |
| TrEMBL | V4L970 | C3H1-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027743mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology