Basic Information
Locus ID:
Thhalv10027711m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3959149 | 3961537 | - | Thhalv10027711m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 61,112.25 Da | 45.12 | 100.00 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 414 | 469 | 5.6E-14 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 157 | 171 | 0.47 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 74 | 3.7E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 364 | 3.47E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 388 | 497 | 1.77E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 506 | 3.3E-77 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 103 | 4.0E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 104 | 224 | 1.1E-33 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 432 | 455 | 6.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 204 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 131 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 431 | 0.31 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 456 | 479 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 227 | 251 | 160.0 | IPR003591 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | 5.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 410 | 431 | 7.581043 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 206 | 228 | 7.011191 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 458 | 480 | 7.157505 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 411 | 424 | 1.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 432 | 445 | 1.3E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_009134748.1 | receptor-like protein 46 [Brassica rapa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | V4LWZ6 | LRRNT_2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027711mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |