Basic Information
Locus ID:
Thhalv10027683m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
(RECEPTOR-like protein kinase) 42
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3482239 | 3484983 | - | Thhalv10027683m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 71,459.07 Da | 41.29 | 87.64 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 54 | 132 | 1.7E-12 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 312 | 581 | 1.0E-42 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 176 | 232 | 4.3E-10 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 295 | 621 | 3.51E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 385 | 5.5E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 386 | 591 | 1.6E-52 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 36 | 134 | 1.2E-15 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 144 | 235 | 1.9E-12 | IPR038408 |
| SMART | SM00220 | serkin_6 | 310 | 583 | 4.1E-27 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 136 | 235 | 14.108148 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 34 | 134 | 15.402598 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 310 | 601 | 35.184486 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 316 | 338 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 433 | 445 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006405500.1 | cysteine-rich receptor-like protein kinase 42 [Eutrema salsugineum] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 0 | |
| TrEMBL | V4M3X5 | Cysteine-rich receptor-like protein kinase 42 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027683mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology