Basic Information
Locus ID:
Thhalv10027630m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_14 | 3534781 | 3538204 | + | Thhalv10027630m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 112,639.08 Da | 58.80 | 58.28 | -1.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 131 | 211 | 7.93518E-26 | - |
| Pfam | PF00855 | PWWP domain | 128 | 211 | 1.9E-18 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 121 | 246 | 9.03E-29 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 116 | 224 | 1.1E-25 | - |
| SMART | SM00293 | PWWP_4 | 128 | 189 | 9.7E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 130 | 191 | 14.23562 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 338 | - | - |
| Coils | Coil | Coil | 933 | 972 | - | - |
| Coils | Coil | Coil | 830 | 850 | - | - |
| Coils | Coil | Coil | 103 | 126 | - | - |
| Coils | Coil | Coil | 786 | 810 | - | - |
| Coils | Coil | Coil | 697 | 717 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_006405506.1 | glutamic acid-rich protein [Eutrema salsugineum] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LT00 | PWWP domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027630mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology