Basic Information
Locus ID:
Thhalv10027497m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
cytochrome P450
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 15104832 | 15106055 | + | Thhalv10027497m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 36,770.33 Da | 51.95 | 85.19 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 41 | 3.1E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 118 | 291 | 3.7E-46 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 98 | 3.01E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 48 | 5.8E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 1.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 247 | 2.2E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 48 | 10.557245 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R02211 (Progesterone + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 17alpha-Hydroxyprogesterone + [Oxidized NADPH---hemoprotein reductase] + H2O)
R03783 (Pregnenolone + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 17alpha-Hydroxypregnenolone + [Oxidized NADPH---hemoprotein reductase] + H2O)
R04852 (21-Deoxycortisol + [Oxidized NADPH---hemoprotein reductase] + H2O <=> 11beta-Hydroxyprogesterone + [Reduced NADPH---hemoprotein reductase] + Oxygen)
R04853 (20alpha-Hydroxycholesterol + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> 17alpha,20alpha-Dihydroxycholesterol + [Oxidized NADPH---hemoprotein reductase] + H2O)
R08517 (17alpha-Hydroxypregnenolone + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> Dehydroepiandrosterone + Acetate + [Oxidized NADPH---hemoprotein reductase] + H2O)
R08518 (17alpha-Hydroxyprogesterone + [Reduced NADPH---hemoprotein reductase] + Oxygen <=> Androstenedione + Acetate + [Oxidized NADPH---hemoprotein reductase] + H2O)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22421.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006410257.2 | F-box/kelch-repeat protein At3g16740 [Eutrema salsugineum] | 0 |
| Q9LUV7 | Putative F-box protein At3g22421 OS=Arabidopsis thaliana OX=3702 GN=At3g22421 PE=4 SV=1 | 0 | |
| TrEMBL | V4MSJ6 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027497mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000550m.g.v1.0, Thhalv10000638m.g.v1.0 ... |