Basic Information
Locus ID:
Thhalv10027352m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 8356139 | 8357761 | + | Thhalv10027352m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 58,573.74 Da | 47.12 | 91.68 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 278 | 400 | 8.3E-10 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 192 | 1.93E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 246 | 506 | 1.73E-21 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 248 | 414 | 1.2E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 213 | 7.4E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 415 | 508 | 2.6E-9 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 267 | 511 | 9.078988 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20790.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006413858.1 | LRR receptor-like serine/threonine-protein kinase HSL2 [Eutrema salsugineum] | 0 |
| Q9M9E0 | L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana OX=3702 GN=LECRKS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4P6W0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027352mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20839 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30077740 |
| Apiaceae | Apium graveolens | 1 | Ag7G01839 |
| Arecaceae | Cocos nucifera | 1 | scaffold007984G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719634 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027352m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g070950.2N, BniB03g061230.2N, BniB05g016160.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0706 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1104, evm.TU.LG12.1107 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00038579, Pov_00038580 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1024 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5711 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17313 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.152 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8606 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23018 |
| Salicaceae | Populus euphratica | 1 | populus_peu17179 |