Basic Information
Locus ID:
Thhalv10027314m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 13023119 | 13025502 | + | Thhalv10027314m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 50,956.71 Da | 37.80 | 97.00 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 52 | 6.5E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 95 | 225 | 4.19E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 86 | 3.92E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 60 | 1.3E-6 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 2.3E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 60 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.6 | - | 0 |
| RefSeq | XP_024004849.1 | putative F-box protein At1g67390 [Eutrema salsugineum] | 0 |
| Q9SAG4 | F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 | 0 | |
| TrEMBL | V4MS26 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027314mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... |
| Brassicaceae | Brassica nigra | 25 | BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28740 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3233_chr01_+ |