HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Thhalv10027248m.g.v1.0
Species & Taxonomic ID: Eutrema salsugineum & 72664
Genome Assembly: GCF_000478725.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold_1 14043196 14044065 - Thhalv10027248m.g.v1.0
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.43 33,759.17 Da 36.70 87.27 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 36 76 9.0E-6 IPR001810
Pfam PF07734 F-box associated 231 289 1.5E-18 IPR006527
SUPERFAMILY SSF81383 F-box domain 37 163 1.14E-15 IPR036047
Gene3D G3DSA:1.20.1280.50 - 32 79 8.0E-7 -
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 131 289 2.9E-39 IPR017451
ProSiteProfiles PS50181 F-box domain profile. 34 80 11.246099 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G17540.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_006414718.2 putative F-box/kelch-repeat protein At3g17540 [Eutrema salsugineum] 0
Swiss-Prot Q9LUP4 Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana OX=3702 GN=At3g17540 PE=4 SV=1 0
TrEMBL V4P942 F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027248mg PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Arecaceae Cocos nucifera 1 COCNU_01G005860
Brassicaceae Arabidopsis thaliana 81 AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ...
AT1G65990.1, AT2G04920.1, AT2G07140.1, AT2G11200.1, AT2G17830.1, AT2G18780.1, AT2G24510.1, AT2G27520.1, AT2G38590.1, AT3G03405.1, AT3G04250.1, AT3G16020.1, AT3G16740.1, AT3G16820.1, AT3G16880.1, AT3G17265.1, AT3G17270.1, AT3G17280.1, AT3G17320.1, AT3G17400.1, AT3G17480.1, AT3G17490.1, AT3G17500.1, AT3G17530.1, AT3G17540.1, AT3G17560.1, AT3G17570.1, AT3G17620.1, AT3G18120.1, AT3G18320.1, AT3G18330.1, AT3G18910.1, AT3G18980.1, AT3G19410.1, AT3G19470.1, AT3G19560.1, AT3G20690.1, AT3G20700.1, AT3G20710.1, AT3G21120.1, AT3G21130.1, AT3G21170.1, AT3G22350.1, AT3G22421.1, AT3G22700.1, AT3G22710.1, AT3G22720.1, AT3G22730.1, AT3G22770.1, AT3G22870.1, AT3G22940.1, AT3G23260.1, AT3G23420.1, AT3G23633.1, AT3G23680.1, AT3G23685.1, AT3G24580.1, AT3G24700.1, AT3G25090.1, AT3G25460.1, AT3G44120.1, AT3G49980.1, AT4G09870.1, AT4G10190.1, AT4G10740.1, AT4G33290.1, AT5G36190.1, AT5G36200.1, AT5G36730.1, AT5G36820.1, AT5G41490.1, AT5G41500.1, AT5G41510.1, AT5G42460.1, AT5G47300.1, AT5G51000.1, AT5G62830.1
Brassicaceae Eutrema salsugineum 96 Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ...
Thhalv10000599m.g.v1.0, Thhalv10000604m.g.v1.0, Thhalv10001129m.g.v1.0, Thhalv10001171m.g.v1.0, Thhalv10001844m.g.v1.0, Thhalv10002009m.g.v1.0, Thhalv10002791m.g.v1.0, Thhalv10002795m.g.v1.0, Thhalv10002817m.g.v1.0, Thhalv10002867m.g.v1.0, Thhalv10002868m.g.v1.0, Thhalv10002911m.g.v1.0, Thhalv10002915m.g.v1.0, Thhalv10002939m.g.v1.0, Thhalv10002957m.g.v1.0, Thhalv10002977m.g.v1.0, Thhalv10002981m.g.v1.0, Thhalv10002985m.g.v1.0, Thhalv10002999m.g.v1.0, Thhalv10003000m.g.v1.0, Thhalv10003040m.g.v1.0, Thhalv10003050m.g.v1.0, Thhalv10003090m.g.v1.0, Thhalv10003102m.g.v1.0, Thhalv10003403m.g.v1.0, Thhalv10005679m.g.v1.0, Thhalv10006371m.g.v1.0, Thhalv10007777m.g.v1.0, Thhalv10009814m.g.v1.0, Thhalv10012007m.g.v1.0, Thhalv10012157m.g.v1.0, Thhalv10015377m.g.v1.0, Thhalv10015387m.g.v1.0, Thhalv10015418m.g.v1.0, Thhalv10015430m.g.v1.0, Thhalv10015464m.g.v1.0, Thhalv10015770m.g.v1.0, Thhalv10015830m.g.v1.0, Thhalv10015889m.g.v1.0, Thhalv10017529m.g.v1.0, Thhalv10017637m.g.v1.0, Thhalv10020932m.g.v1.0, Thhalv10020934m.g.v1.0, Thhalv10020988m.g.v1.0, Thhalv10021906m.g.v1.0, Thhalv10021918m.g.v1.0, Thhalv10021925m.g.v1.0, Thhalv10021928m.g.v1.0, Thhalv10021950m.g.v1.0, Thhalv10021953m.g.v1.0, Thhalv10021978m.g.v1.0, Thhalv10021981m.g.v1.0, Thhalv10022006m.g.v1.0, Thhalv10022064m.g.v1.0, Thhalv10022067m.g.v1.0, Thhalv10022074m.g.v1.0, Thhalv10022075m.g.v1.0, Thhalv10022089m.g.v1.0, Thhalv10022091m.g.v1.0, Thhalv10022121m.g.v1.0, Thhalv10022140m.g.v1.0, Thhalv10022141m.g.v1.0, Thhalv10022145m.g.v1.0, Thhalv10022148m.g.v1.0, Thhalv10022163m.g.v1.0, Thhalv10022189m.g.v1.0, Thhalv10022250m.g.v1.0, Thhalv10022266m.g.v1.0, Thhalv10022270m.g.v1.0, Thhalv10022281m.g.v1.0, Thhalv10022288m.g.v1.0, Thhalv10022315m.g.v1.0, Thhalv10022361m.g.v1.0, Thhalv10022364m.g.v1.0, Thhalv10022368m.g.v1.0, Thhalv10022377m.g.v1.0, Thhalv10022393m.g.v1.0, Thhalv10022401m.g.v1.0, Thhalv10022418m.g.v1.0, Thhalv10022425m.g.v1.0, Thhalv10022798m.g.v1.0, Thhalv10023157m.g.v1.0, Thhalv10026768m.g.v1.0, Thhalv10026986m.g.v1.0, Thhalv10027003m.g.v1.0, Thhalv10027013m.g.v1.0, Thhalv10027248m.g.v1.0, Thhalv10027355m.g.v1.0, Thhalv10027376m.g.v1.0, Thhalv10027471m.g.v1.0, Thhalv10027516m.g.v1.0, Thhalv10027561m.g.v1.0, Thhalv10028127m.g.v1.0, Thhalv10029509m.g.v1.0
Brassicaceae Schrenkiella parvula 15 Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ...
Sp3g15660.v2.2, Sp3g15690.v2.2, Sp3g17310.v2.2, Sp3g18730.v2.2, Sp3g19130.v2.2, Sp3g21250.v2.2, Sp3g22340.v2.2, Sp4g04370.v2.2, Sp4g16570.v2.2, Sp4g17180.v2.2, Sp7g11920.v2.2, Sp7g29450.v2.2
Brassicaceae Brassica nigra 83 BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ...
BniB01g042490.2N, BniB01g042510.2N, BniB01g042540.2N, BniB01g042580.2N, BniB01g042590.2N, BniB01g042610.2N, BniB01g043040.2N, BniB01g043050.2N, BniB01g043060.2N, BniB01g043110.2N, BniB01g044140.2N, BniB01g044150.2N, BniB01g045040.2N, BniB01g047300.2N, BniB01g047310.2N, BniB01g047900.2N, BniB01g049140.2N, BniB01g049150.2N, BniB02g010180.2N, BniB02g010740.2N, BniB02g047620.2N, BniB02g064000.2N, BniB03g024790.2N, BniB03g025020.2N, BniB03g039860.2N, BniB03g049230.2N, BniB03g049760.2N, BniB03g068000.2N, BniB04g038530.2N, BniB04g038580.2N, BniB04g038590.2N, BniB04g038600.2N, BniB04g038610.2N, BniB04g038620.2N, BniB04g043970.2N, BniB04g056000.2N, BniB04g056010.2N, BniB05g004620.2N, BniB05g007210.2N, BniB05g007230.2N, BniB05g017560.2N, BniB05g019400.2N, BniB05g019430.2N, BniB05g025140.2N, BniB05g038570.2N, BniB06g008450.2N, BniB06g026860.2N, BniB06g027320.2N, BniB06g027400.2N, BniB06g027440.2N, BniB06g028000.2N, BniB06g048280.2N, BniB07g002470.2N, BniB07g002490.2N, BniB07g002510.2N, BniB07g023750.2N, BniB07g024380.2N, BniB07g024430.2N, BniB07g029280.2N, BniB07g029470.2N, BniB07g029780.2N, BniB07g030600.2N, BniB07g031750.2N, BniB07g048390.2N, BniB07g048640.2N, BniB07g048810.2N, BniB07g050430.2N, BniB07g051260.2N, BniB07g052390.2N, BniB07g052550.2N, BniB07g052760.2N, BniB07g052960.2N, BniB07g053790.2N, BniB07g057530.2N, BniB07g057550.2N, BniB08g006680.2N, BniB08g006690.2N, BniB08g019980.2N, BniB08g038820.2N, BniS06172g150.2N
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.