Basic Information
Locus ID:
Thhalv10027233m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 14400764 | 14402072 | + | Thhalv10027233m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 47,625.85 Da | 66.32 | 65.10 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 351 | 417 | 3.76057E-16 | - |
| CDD | cd02958 | UAS | 129 | 243 | 2.97589E-36 | - |
| Pfam | PF00789 | UBX domain | 350 | 400 | 4.3E-8 | IPR001012 |
| Pfam | PF13899 | Thioredoxin-like | 133 | 214 | 2.0E-7 | - |
| Pfam | PF14555 | UBA-like domain | 43 | 80 | 2.4E-10 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 38 | 80 | 1.55E-5 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 341 | 417 | 5.43E-12 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 123 | 242 | 6.04E-25 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 131 | 244 | 1.8E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 349 | 418 | 7.8E-12 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 38 | 83 | 1.9E-8 | - |
| SMART | SM00594 | 45neu3 | 115 | 241 | 1.5E-30 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 345 | 418 | 19.376726 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 122 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14245.1 | - | 0 |
| RefSeq | XP_024005706.1 | LOW QUALITY PROTEIN: plant UBX domain-containing protein 16 [Eutrema salsugineum] | 0 |
| P0DKI5 | Plant UBX domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUX16 PE=2 SV=1 | 0 | |
| TrEMBL | V4ML15 | UBX domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027233mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027233m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12210.v2.2 |