Basic Information
Locus ID:
Thhalv10027120m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9678420 | 9679100 | + | Thhalv10027120m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 26,095.29 Da | 53.73 | 85.80 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 155 | 199 | 2.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 206 | 1.23E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 204 | 1.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 198 | 8.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 199 | 12.312242 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006414153.1 | NEP1-interacting protein-like 1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4P7N9 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027120mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027120m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB03g012320.2N, BniB03g020580.2N, BniB06g048400.2N |