Basic Information
Locus ID:
Thhalv10027104m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2695592 | 2696653 | + | Thhalv10027104m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 29,523.83 Da | 48.36 | 98.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 151 | 230 | 7.6E-5 | IPR006527 |
| Pfam | PF00646 | F-box domain | 2 | 35 | 1.3E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 49 | 5.76E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 42 | 1.2E-5 | - |
| SMART | SM00256 | fbox_2 | 3 | 43 | 0.0025 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 43 | 11.511044 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43260.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006282770.2 | putative F-box protein At1g12855 [Capsella rubella] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | V4P318 | FBA_1 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027104mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |