Basic Information
Locus ID:
Thhalv10027098m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat, conserved site (InterPro IPR019775), WD40 repeat (InterPro IPR001680), G-protein beta WD-40 repeat, region (InterPro IPR020472), WD40 repeat-like-containing domain (InterPro IPR011046), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat, subgroup (InterPro IPR019781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 1951056 | 1953631 | - | Thhalv10027098m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 49,882.90 Da | 36.69 | 77.01 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 436 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 391 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 300 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 260 | 0.0054 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 186 | 438 | 6.83E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 446 | 9.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 306 | 3.2E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 263 | 303 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 260 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 0.0074 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 391 | 8.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 227 | 265 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 445 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 269 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 358 | 400 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 358 | 396 | 11.128319 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 247 | 261 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 378 | 392 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 378 | 392 | 3.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 247 | 261 | 3.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 423 | 437 | 3.6E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35370.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024004406.1 | periodic tryptophan protein 1 homolog [Eutrema salsugineum] | 0 |
| Q9P775 | Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC1711.16 PE=1 SV=1 | 0 | |
| TrEMBL | V4MB23 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027098mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16127, jg37868 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5616 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033670 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15735, Sbi_jg56527 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13751 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016933 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34098, Sgl34327, Sgl39728 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019212, gene:ENSEOMG00000021516 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0010980, CQ.Regalona.r1.7AG0013220 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30165830, pistato.v30203190, pistato.v30275770 |
| Apiaceae | Apium graveolens | 1 | Ag7G01249 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703761 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2696.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G07074, Ftri7G19854 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G18900.1, AT4G18905.2, AT4G35370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024971m.g.v1.0, Thhalv10027098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp7g17610.v2.2, Sp7g33160.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g071650.2N, BniB05g003020.2N, BniB05g017470.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2198 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2397 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16160 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0100s00022.v1.0, Dusal.0100s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10693 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1020 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008070 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31571, Lb6G31572 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4358, AH05.585, BH02.4394, BH03.4050, CH02.4439 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150560, gene-QOZ80_2BG0205990 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0093090.1, HORVU.MOREX.r3.3HG0311440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057455 |
| Poaceae | Oryza coarctata | 2 | Oco01G028780, Oco02G029880 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g69970.1, LOC_Os06g30680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G386400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503349, Pt_Chr0600565 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr0G000680, Chr0G022140, Chr10G006830, Chr11G012520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G715900, Tel3E01G690600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG062640, gene_TRIDC1BG071820 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G425700.1, TraesCS1B02G459900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142980_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-53216, nbis-gene-53217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29958 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.36, evm.TU.LG24.263 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g35990, gene.Posoc04g00010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.201, evm.TU.Scaffold_6_RagTag.2053 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-417, nbisL1-mrna-452, nbisL1-mrna-573 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10428, nbisL1-mrna-11991 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5952 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1252, evm.TU.utg000019l.1116 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007104, Maker00012740 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15620, nbisL1-mrna-6515 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3052 |
| Salicaceae | Populus euphratica | 2 | populus_peu23630, populus_peu28853 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612624, gene-LOC132616697 |
| Solanaceae | Solanum chilense | 1 | SOLCI000566400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018001 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4994 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G2236, TC10G2239 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35910.v3.1 |