halophFGD

Basic Information

Locus ID: Thhalv10027057m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: ubiquitin-NEDD8-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_1	3736225	3737506	+	Thhalv10027057m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.99	5,189.99 Da	43.15	97.39	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF54236	Ubiquitin-like	13	43	1.66E-7	IPR029071
Gene3D	G3DSA:3.10.20.90	-	3	43	7.5E-9	-
ProSiteProfiles	PS50053	Ubiquitin domain profile.	14	42	8.720258	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K12158 (ubiquitin-like protein Nedd8)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G31340.1	related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.
RefSeq	XP_006415337.1	ubiquitin-NEDD8-like protein RUB1 [Eutrema salsugineum]
Swiss-Prot	Q9SHE7	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3
TrEMBL	V4MCE2	Ubiquitin-like domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027057mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	1	Thhalv10027057m.g.v1.0
Brassicaceae	Brassica nigra	2	BniB04g047160.2N, BniB08g027520.2N
Poaceae	Lolium multiflorum	1	gene-QYE76_021054
Poaceae	Triticum dicoccoides	2	gene_TRIDC6BG024370, gene_TRIDC7BG056460