Basic Information
Locus ID:
Thhalv10027031m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 530647 | 531869 | - | Thhalv10027031m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 41,170.15 Da | 47.23 | 76.69 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 127 | 149 | 2.4E-4 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 157 | 194 | 4.5E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 27 | 73 | 7.7E-6 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 92 | 345 | 4.45E-32 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 79 | 2.22E-5 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 56 | 327 | 2.7E-21 | IPR015915 |
| SMART | SM00256 | fbox_2 | 31 | 71 | 0.0024 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 71 | 10.716211 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61540.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_024004385.1 | LOW QUALITY PROTEIN: putative F-box/kelch-repeat protein At1g61540 [Eutrema salsugineum] | 0 |
| Q9SY96 | Putative F-box/kelch-repeat protein At1g61540 OS=Arabidopsis thaliana OX=3702 GN=At1g61540 PE=4 SV=1 | 0 | |
| TrEMBL | V4P1K6 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027031mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61540.1, AT4G39590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10027031m.g.v1.0, Thhalv10029197m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB05g000430.2N, BniB05g000440.2N, BniB05g000450.2N |