halophFGD

Basic Information

Locus ID: Thhalv10026858m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: ubiquitin-conjugating enzyme

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_1	18420349	18420792	+	Thhalv10026858m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.58	16,964.49 Da	33.65	80.88	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	1	140	1.86374E-36	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	7	138	3.6E-34	IPR000608
SUPERFAMILY	SSF54495	UBC-like	5	145	7.77E-41	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	1	142	1.6E-41	IPR016135
SMART	SM00212	ubc_7	2	145	4.2E-34	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	145	39.251118	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G64230.1	ubiquitin-conjugating enzyme 28.
RefSeq	XP_006414951.1	ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum]
Swiss-Prot	Q94F47	Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1
TrEMBL	V4MIF1	UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026858mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	20	Thhalv10001269m.g.v1.0, Thhalv10002197m.g.v1.0 ... Thhalv10002203m.g.v1.0, Thhalv10002233m.g.v1.0, Thhalv10002235m.g.v1.0, Thhalv10002264m.g.v1.0, Thhalv10002338m.g.v1.0, Thhalv10003491m.g.v1.0, Thhalv10009334m.g.v1.0, Thhalv10009877m.g.v1.0, Thhalv10011082m.g.v1.0, Thhalv10011132m.g.v1.0, Thhalv10012339m.g.v1.0, Thhalv10015758m.g.v1.0, Thhalv10019783m.g.v1.0, Thhalv10023193m.g.v1.0, Thhalv10024154m.g.v1.0, Thhalv10026858m.g.v1.0, Thhalv10029190m.g.v1.0, Thhalv10029369m.g.v1.0