Basic Information
Locus ID:
Thhalv10026834m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 4584205 | 4585376 | - | Thhalv10026834m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 42,564.47 Da | 49.81 | 75.54 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 54 | 1.4E-9 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 129 | 168 | 2.7E-12 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 171 | 212 | 1.7E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 71 | 342 | 3.53E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 55 | 3.11E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 99 | 312 | 6.6E-31 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 53 | 7.3E-6 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 1.3E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 183 | 234 | 13.0 | IPR006652 |
| SMART | SM00612 | kelc_smart | 136 | 182 | 1.6E-9 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 12.120415 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39560.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_024004456.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At5g39560 [Eutrema salsugineum] | 0 |
| Q6NL02 | F-box/kelch-repeat protein At5g39560 OS=Arabidopsis thaliana OX=3702 GN=At5g39560 PE=2 SV=1 | 0 | |
| TrEMBL | V4MG87 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026834mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39560.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10017575m.g.v1.0, Thhalv10026834m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB02g084270.2N, BniB05g008250.2N, BniB05g008260.2N |