Basic Information
Locus ID:
Thhalv10026808m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Nnf1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 8909062 | 8909853 | + | Thhalv10026808m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 12,553.10 Da | 41.03 | 86.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 53 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19350.1 | embryo defective 3006. | 0 |
| RefSeq | XP_006413987.2 | uncharacterized protein LOC18029163 isoform X2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LXN3 | SKA2 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026808mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23659 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1754 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003481 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4678, Sbi_jg7400, Sbi_jg7401 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12629 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001375 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51757, Sgl57062 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020108, gene:ENSEOMG00000024140 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0009900, CQ.Regalona.r1.5BG0009910 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30125180, pistato.v30195870 |
| Apiaceae | Apium graveolens | 1 | Ag9G01569 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696811, gene-LOC120105906 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.144.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G21529 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026808m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g017090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0047 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0030 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05300 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0503s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g04300 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11429 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.83, evm.TU.LG09.1137 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000932, Pov_00028571 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23963, Lb4G24305 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.410, BH08.419, CH08.494 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0618510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0507840.1 |
| Poaceae | Oryza coarctata | 2 | Oco15G002740, Oco16G002760 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g06520.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G001760, Chr17G001610, Chr20G011540, Chr29G011060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G592600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054410, gene_TRIDC5BG058380 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G372300.1, TraesCS5B02G374400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb415480_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39017, nbis-gene-41666 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22522, Zma_g23659 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.534, evm.TU.LG17.545 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.625 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24811 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016082 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-197 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10455 |
| Salicaceae | Populus euphratica | 1 | populus_peu08155 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604254 |
| Solanaceae | Solanum chilense | 1 | SOLCI004441900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005671 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8943_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4682 |