Basic Information
Locus ID:
Thhalv10026802m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 13438652 | 13439666 | + | Thhalv10026802m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 38,341.64 Da | 38.32 | 83.89 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 193 | 307 | 6.0E-20 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 108 | 7.94E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 107 | 4.5E-6 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 0.0013 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 94 | 311 | 9.4E-42 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 54 | 9.762413 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22650.2 | - | 0 |
| RefSeq | XP_006414659.2 | putative F-box protein At3g22650 [Eutrema salsugineum] | 0 |
| Q9LUJ6 | Putative F-box protein At3g22650 OS=Arabidopsis thaliana OX=3702 GN=At3g22650 PE=4 SV=1 | 0 | |
| TrEMBL | V4P900 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026802mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |