Basic Information
Locus ID:
Thhalv10026313m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 5105458 | 5107058 | + | Thhalv10026313m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 22,162.00 Da | 65.10 | 67.34 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 19 | 75 | 2.65965E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 21 | 73 | 9.3E-11 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 79 | 4.86E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 87 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 73 | 2.5E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 74 | 12.99088 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_006412976.1 | E3 ubiquitin-protein ligase RMA2 [Eutrema salsugineum] | 0 |
| P93030 | E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LUV9 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026313mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology