Basic Information
Locus ID:
Thhalv10025810m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9775077 | 9776000 | + | Thhalv10025810m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 33,961.64 Da | 36.53 | 83.48 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 199 | 1.05773E-17 | - |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 1.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 215 | 8.08E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 204 | 8.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 198 | 1.0E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 153 | 207 | 0.0067 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.69582 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17905.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL4H. | 0 |
| RefSeq | XP_006414173.1 | putative RING-H2 finger protein ATL53 [Eutrema salsugineum] | 0 |
| P0C041 | Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 | 0 | |
| TrEMBL | V4P7Q7 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025810mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology