Basic Information
Locus ID:
Thhalv10025767m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2728582 | 2729983 | - | Thhalv10025767m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 35,690.29 Da | 63.70 | 90.29 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 161 | 204 | 9.15568E-17 | - |
| Pfam | PF13639 | Ring finger domain | 161 | 204 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 210 | 1.92E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 212 | 8.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 203 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 204 | 13.079398 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 265 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024004674.1 | LOW QUALITY PROTEIN: RING-H2 finger protein ATL52 [Eutrema salsugineum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | V4LT52 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025767mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology