Basic Information
Locus ID:
Thhalv10025761m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9912635 | 9914800 | + | Thhalv10025761m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 34,346.20 Da | 41.93 | 72.33 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 68 | 8.3E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2 | 81 | 9.91E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 2.8E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 3.0E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.786573 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 317 | - | - |
| Coils | Coil | Coil | 223 | 243 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_006414195.1 | binding partner of ACD11 1 [Eutrema salsugineum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MR56 | RRM domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025761mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology