Basic Information
Locus ID:
Thhalv10025714m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 15273467 | 15274444 | + | Thhalv10025714m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 37,093.74 Da | 79.18 | 66.98 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 221 | 263 | 3.0E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 24 | 56 | 7.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 269 | 2.5E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 269 | 2.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 262 | 7.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 263 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006414828.2 | E3 ubiquitin-protein ligase RING1-like [Eutrema salsugineum] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | V4P9E2 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025714mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology