Basic Information
Locus ID:
Thhalv10025594m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2279308 | 2281813 | + | Thhalv10025594m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 38,943.38 Da | 37.01 | 74.79 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07607 | BAR_SH3P_plant | 28 | 237 | 1.65282E-125 | - |
| Pfam | PF14604 | Variant SH3 domain | 289 | 337 | 1.4E-8 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 27 | 238 | 2.27E-23 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 284 | 342 | 1.16E-14 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 272 | 349 | 9.0E-14 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 25 | 250 | 2.4E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 285 | 340 | 1.0E-11 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 282 | 341 | 18.457163 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 260 | - | - |
| Coils | Coil | Coil | 129 | 163 | - | - |
| Coils | Coil | Coil | 166 | 193 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_006412199.2 | SH3 domain-containing protein 2 [Eutrema salsugineum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MEJ1 | SH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025594mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology