Basic Information
Locus ID:
Thhalv10025542m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 4738087 | 4740805 | + | Thhalv10025542m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 40,197.47 Da | 48.35 | 67.76 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 107 | 352 | 1.7E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 235 | 342 | 2.06E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 237 | 355 | 1.6E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 241 | 343 | 24.655334 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 233 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_024004660.1 | auxin-responsive protein IAA27 [Eutrema salsugineum] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | V4MN74 | Auxin-responsive protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025542mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology