Basic Information
Locus ID:
Thhalv10025492m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 13563790 | 13565159 | - | Thhalv10025492m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 41,924.05 Da | 58.67 | 108.37 | 0.03 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60040.5 | - | 0 |
| RefSeq | XP_023638528.1 | F-box/LRR-repeat protein At3g60040 [Capsella rubella] | 0 |
| Q8GWI2 | F-box/LRR-repeat protein At3g60040 OS=Arabidopsis thaliana OX=3702 GN=At3g60040 PE=2 SV=1 | 0 | |
| TrEMBL | V4LZN0 | FBD domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025492mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10001423m.g.v1.0, Thhalv10025492m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041250.2N |