Basic Information
Locus ID:
Thhalv10025489m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 314475 | 317060 | + | Thhalv10025489m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 41,967.68 Da | 44.37 | 75.67 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 312 | 360 | 8.9E-10 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 278 | 363 | 3.28E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 46 | 260 | 3.59E-23 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 45 | 275 | 1.6E-12 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 294 | 370 | 1.4E-15 | - |
| SMART | SM00326 | SH3_2 | 308 | 363 | 3.2E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 305 | 364 | 19.806787 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 310 | 330 | 8.7E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 330 | 346 | 8.7E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 346 | 359 | 8.7E-6 | - |
| Coils | Coil | Coil | 186 | 220 | - | - |
| Coils | Coil | Coil | 244 | 271 | - | - |
| Coils | Coil | Coil | 149 | 172 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_006411698.1 | SH3 domain-containing protein 2 [Eutrema salsugineum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | V4P1G7 | SH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025489mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology