halophFGD

Basic Information

Locus ID: Thhalv10025429m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Protein of unknown function (DUF295)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_1	7679402	7680613	+	Thhalv10025429m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.04	45,307.69 Da	41.14	77.32	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	18	60	4.1E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	18	54	3.79E-7	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	18	57	6.7E-7	-
SMART	SM00256	fbox_2	22	62	4.0E-6	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22180.1	F-box family protein with a domain of unknown function (DUF295).
RefSeq	XP_024004517.1	LOW QUALITY PROTEIN: putative F-box protein At4g22170 [Eutrema salsugineum]
Swiss-Prot	O49624	Putative F-box protein At4g22180 OS=Arabidopsis thaliana OX=3702 GN=At4g22180 PE=4 SV=3
TrEMBL	V4MQ04	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025429mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	36	AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... AT1G67160.1, AT1G69090.1, AT2G03560.1, AT2G03580.1, AT2G03610.1, AT2G04810.1, AT2G04830.1, AT2G04840.1, AT2G05970.1, AT2G14290.1, AT2G14500.1, AT2G24080.1, AT2G33190.1, AT2G33200.1, AT3G03726.1, AT3G03730.1, AT3G22345.1, AT4G10820.1, AT4G12810.1, AT4G12820.1, AT4G14165.1, AT4G17565.1, AT4G22060.1, AT4G22165.1, AT4G22170.1, AT4G22180.1, AT4G22660.1, AT5G14160.1, AT5G25290.1, AT5G25300.1, AT5G38270.1, AT5G66830.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... Thhalv10003406m.g.v1.0, Thhalv10005536m.g.v1.0, Thhalv10005623m.g.v1.0, Thhalv10005703m.g.v1.0, Thhalv10009751m.g.v1.0, Thhalv10009801m.g.v1.0, Thhalv10010442m.g.v1.0, Thhalv10013780m.g.v1.0, Thhalv10013894m.g.v1.0, Thhalv10015550m.g.v1.0, Thhalv10015724m.g.v1.0, Thhalv10017543m.g.v1.0, Thhalv10017659m.g.v1.0, Thhalv10017793m.g.v1.0, Thhalv10022303m.g.v1.0, Thhalv10025429m.g.v1.0, Thhalv10025466m.g.v1.0, Thhalv10026778m.g.v1.0, Thhalv10027445m.g.v1.0, Thhalv10027492m.g.v1.0, Thhalv10028086m.g.v1.0, Thhalv10028141m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... Sp4g15490.v2.2
Brassicaceae	Brassica nigra	32	BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... BniB02g015870.2N, BniB02g079660.2N, BniB02g079670.2N, BniB02g079680.2N, BniB02g079710.2N, BniB04g003420.2N, BniB04g003440.2N, BniB04g020100.2N, BniB04g022220.2N, BniB05g014900.2N, BniB05g014910.2N, BniB05g014920.2N, BniB05g014930.2N, BniB05g018820.2N, BniB05g037380.2N, BniB05g045930.2N, BniB05g075540.2N, BniB06g013440.2N, BniB06g022380.2N, BniB06g022390.2N, BniB06g022410.2N, BniB07g060540.2N, BniB08g005890.2N, BniB08g010430.2N, BniB08g013090.2N, BniB08g013100.2N, BniB08g021060.2N, BniB08g034830.2N, BniB08g034840.2N