Basic Information
Locus ID:
Thhalv10025413m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 256955 | 258136 | + | Thhalv10025413m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 44,376.44 Da | 59.16 | 74.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 195 | 233 | 1.2E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 148 | 188 | 2.3E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 46 | 90 | 3.8E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 117 | 9.29E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 97 | 376 | 6.41E-37 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 94 | 362 | 4.0E-24 | IPR015915 |
| SMART | SM00256 | fbox_2 | 50 | 90 | 3.7E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 155 | 201 | 0.18 | IPR006652 |
| SMART | SM00612 | kelc_smart | 202 | 254 | 1.8 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 44 | 90 | 11.19311 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006411683.1 | F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | V4P1F4 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025413mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10510.1, AT4G38940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025413m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g089480.2N |