Basic Information
Locus ID:
Thhalv10025352m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Fasciclin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 21688327 | 21690194 | + | Thhalv10025352m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 43,614.90 Da | 33.80 | 88.91 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 37 | 135 | 3.0E-6 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 200 | 328 | 9.3E-16 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 190 | 329 | 8.11E-19 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 32 | 177 | 9.55E-20 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 173 | 329 | 1.6E-12 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 172 | 2.0E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 225 | 329 | 6.0E-19 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 26 | 174 | 13.641674 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 187 | 326 | 14.307325 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 374 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_006415013.1 | fasciclin-like arabinogalactan protein 2 [Eutrema salsugineum] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | V4P9V6 | Fasciclin-like arabinogalactan protein 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025352mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology