Basic Information
Locus ID:
Thhalv10025286m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2127084 | 2129280 | + | Thhalv10025286m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 48,171.91 Da | 39.88 | 77.29 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 290 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 247 | 9.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 357 | 392 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 334 | 2.9E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 17 | 88 | 1.6E-21 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 113 | 396 | 2.2E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 416 | 8.5E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 198 | 7.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 334 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 393 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.004 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 301 | 336 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 200 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 301 | 336 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 256 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 394 | 9.004632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 321 | 335 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 185 | 199 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 321 | 335 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 277 | 291 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 185 | 199 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 425 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_006412159.1 | WD-40 repeat-containing protein MSI3 [Eutrema salsugineum] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | V4MEF7 | CAF1C_H4-bd domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025286mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology