Basic Information
Locus ID:
Thhalv10025270m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
AFC2
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 6513211 | 6516588 | + | Thhalv10025270m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 49,770.78 Da | 45.43 | 81.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14134 | PKc_CLK | 86 | 424 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 99 | 424 | 1.2E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 426 | 5.38E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 153 | 424 | 2.2E-112 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 86 | 179 | 2.2E-112 | - |
| SMART | SM00220 | serkin_6 | 99 | 424 | 4.9E-76 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 99 | 424 | 37.898212 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 220 | 232 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24740.1 | FUS3-complementing gene 2. a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. | 0 |
| RefSeq | XP_006413390.1 | serine/threonine-protein kinase AFC2 isoform X1 [Eutrema salsugineum] | 0 |
| P51567 | Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MPA3 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025270mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology