Basic Information
Locus ID:
Thhalv10025269m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 6208535 | 6211025 | + | Thhalv10025269m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 46,685.41 Da | 28.06 | 78.34 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18345 | Zinc finger domain | 106 | 124 | 1.6E-8 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 0.0021 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 132 | 421 | 3.57E-44 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 101 | 124 | 2.35E-6 | IPR036855 |
| Gene3D | G3DSA:4.10.1000.10 | - | 99 | 125 | 3.0E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 427 | 8.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 126 | 217 | 1.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 7.3E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 102 | 126 | 1.1E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 27 | 50 | 0.023 | IPR000571 |
| SMART | SM00320 | WD40_4 | 210 | 247 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 378 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 291 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 331 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 418 | 4.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 100 | 127 | 15.75078 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 170 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 300 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 25 | 51 | 9.065741 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 278 | 292 | 1.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_006413303.1 | zinc finger CCCH domain-containing protein 48 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | V4P5I4 | Zinc finger CCCH domain-containing protein 48-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025269mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology