Basic Information
Locus ID:
Thhalv10025237m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 8617163 | 8618482 | - | Thhalv10025237m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 50,747.69 Da | 54.84 | 88.65 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 249 | 375 | 1.4E-23 | IPR013187 |
| Pfam | PF00646 | F-box domain | 45 | 86 | 5.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 115 | 5.63E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 82 | 7.0E-7 | - |
| SMART | SM00256 | fbox_2 | 46 | 86 | 9.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 145 | 374 | 2.8E-34 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 89 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19930.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006413922.1 | F-box protein At4g19940 [Eutrema salsugineum] | 0 |
| O49420 | F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana OX=3702 GN=At4g19930 PE=4 SV=1 | 0 | |
| TrEMBL | V4LXG3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025237mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |