Basic Information
Locus ID:
Thhalv10025162m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2812975 | 2815222 | + | Thhalv10025162m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 50,456.88 Da | 44.43 | 75.60 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 160 | 430 | 4.70371E-44 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 177 | 235 | 4.3E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 294 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 430 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 345 | 3.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 152 | 430 | 3.89E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 433 | 3.0E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 345 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 251 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 430 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 210 | 9.7E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 294 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 303 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 431 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 219 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 431 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 354 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 178 | 210 | 8.755605 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 417 | 431 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006412373.1 | cell division cycle 20.1, cofactor of APC complex [Eutrema salsugineum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4P351 | ANAPC4_WD40 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025162mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology